miRBase entry: hsv2-mir-H5

Stem-loop hsv2-mir-H5


Accession
MI0014713
Description
Herpes Simplex Virus 2 hsv2-mir-H5 precursor miRNA
Gene family
MIPF0000966; mir-H5


Sequence

cucccgcuccugcGGGGGGGCUCGGGCCACCUGACCuucguaaccugcacucaggucagagccccagaccccccgcgggcgcgggag
(((((((.(((((((((((.((.((((...(((((((..((.......))..))))))).)))).)).))))))))))).)))))))

Structure
       u           G  C    CAC       uc  aa 
cucccgc ccugcGGGGGG CU GGGC   CUGACCu  gu  c
||||||| ||||||||||| || ||||   |||||||  ||  c
gagggcg gggcgcccccc ga cccg   gacugga  ca  u
       c           a  c    --a       cu  cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hsv2-miR-H5

Accession MIMAT0015650
Description Herpes Simplex Virus 2 hsv2-miR-H5 mature miRNA
Sequence 14 - GGGGGGGCUCGGGCCACCUGACC - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20181707
    Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
    "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
    "J Virol (2010) 84:4659-4672