miRBase entry: nvi-mir-13b

Stem-loop nvi-mir-13b


Accession
MI0014726
Description
Nasonia vitripennis nvi-mir-13b precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

agagcgcgauccgaucgucaaauugguuguggcguguugucuagauuuucaUAUCACAGCCAUUUUUGACGAGUuggaucauggcuugcgau
.((((..(((((((((((((((.(((((((((.(((.............))).)))))))))..)))))))).)))))))...)))).....

Structure
----a    -gc       -        -u         c   uuguc 
     gagc   gauccga ucgucaaa  ugguugugg gug     u
     ||||   ||||||| ||||||||  ||||||||| |||     a
     uucg   cuagguU AGCAGUUU  ACCGACACU Uac     g
uagcg    gua       G        UU         A   uuuua 


Annotation confidence Not enough data
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Genome context
chr1: 8079595-8079686 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nvi-mir-13b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-13b

Accession MIMAT0015665
Description Nasonia vitripennis nvi-miR-13b mature miRNA
Sequence 52 - UAUCACAGCCAUUUUUGACGAGU - 74
Evidence not_experimental

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348