miRBase entry: ppy-mir-18b

Stem-loop ppy-mir-18b

Accession

MI0014796

Description

Pongo pygmaeus ppy-mir-18b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

uguguUAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucuacugcccuaaaugccccuucuggca
(((...((((.((((.(((.(((((.((................))))))).))).)))).))))...)))

Structure

   guU    U    C   U     U  ugaagca 
ugu   AAGG GCAU UAG GCAGU AG       g
|||   |||| |||| ||| ||||| ||        
acg   uucc cgua auc cguca uc       c
   guc    c    a   c     -  uaagauu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chrX: 133612966-133613036 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-18b

Accession	MIMAT0015731
Description	Pongo pygmaeus ppy-miR-18b mature miRNA
Sequence	6 - UAAGGUGCAUCUAGUGCAGUUAG - 28
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64