miRBase entry: ppy-mir-34b

Stem-loop ppy-mir-34b


Accession
MI0014807
Description
Pongo pygmaeus ppy-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

gugcucgguuuguaggcagugucauuagcugauuguacugugaugguuaCAAUCACUAACUCCACUGCCAUcaaaacaaggcac
(((((..((((...(((((((...((((.((((((((((.....)).))))))))))))...)))))))....))))..)))))

Structure
     cg    -gua       uca    c        -  g 
gugcu  guuu    ggcagug   uuag ugauugua cu u
|||||  ||||    |||||||   |||| |||||||| || g
cacgg  caaa    CCGUCAC   AAUC ACUAACau gg a
     aa    acUA       CUC    -        u  u 


Annotation confidence Not enough data
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Genome context
chr11: 108238803-108238886 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-34b

Accession MIMAT0015741
Description Pongo pygmaeus ppy-miR-34b mature miRNA
Sequence 50 - CAAUCACUAACUCCACUGCCAU - 71
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64