Stem-loop ppy-mir-34c

Accession

MI0014808

Description

Pongo pygmaeus ppy-mir-34c precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACGGCCAGGuaaaaagauu
.((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure

a    ag     A   A    A     C      C  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aauGG CCG CACA CAAUC ACUAAc au a
u    aa     A   G    C     -      c  g 

Annotation confidence Not enough data

Genome context

chr11: 108239300-108239376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-34c

Mature ppy-miR-34c-5p

• Accession: MIMAT0015742
• Description: Pongo pygmaeus ppy-miR-34c-5p mature miRNA
• Sequence: 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
• Evidence: not_experimental

Mature ppy-miR-34c-3p

• Accession: MIMAT0015743
• Description: Pongo pygmaeus ppy-miR-34c-3p mature miRNA
• Sequence: 46 - AAUCACUAACCACACGGCCAGG - 67
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64