miRBase entry: ppy-mir-130b

Stem-loop ppy-mir-130b

Accession

MI0014823

Description

Pongo pygmaeus ppy-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

ggccugcccgacacucuuucccuguugcacuacuaugggccgcugggaagCAGUGCAAUGAUGAAAGGGCAUcggucagguc
((((((.((((..(((((((..(((((((((..........(((....))))))))))))..)))))))..)))).))))))

Structure

      c    ca       cc         acuaugggcc   g 
ggccug ccga  cucuuuc  uguugcacu          gcu g
|||||| ||||  |||||||  |||||||||          |||  
cuggac ggcU  GGGAAAG  GUAACGUGA          Cga g
      u    AC       UA         ----------   a

Annotation confidence Not enough data

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Genome context

chr22: 16950667-16950748 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-130b

Accession	MIMAT0015754
Description	Pongo pygmaeus ppy-miR-130b mature miRNA
Sequence	51 - CAGUGCAAUGAUGAAAGGGCAU - 72
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64