miRBase entry: ppy-mir-199b

Stem-loop ppy-mir-199b

Accession

MI0014860

Description

Pongo pygmaeus ppy-mir-199b precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

ccagaggacaccuccacuccgucuaccuuuGUGUUUAGACUAUCUGUUCaggacucccaaauuguACAGUAUUCUGCACAUUGGUUAggcugggcuggguuagacccucgg
((.((((.....(((((((.(((((((..(((((..(((.((.((((.(((..........))).)))))).))))))))..)).))))).))).))))......))))))

Structure

  a    -acacc    -   c     -  uu     UU   C  U    U   gacu 
cc gagg      ucca cuc gucua cc  uGUGU  AGA UA CUGU Cag    c
|| ||||      |||| ||| ||||| ||  |||||  ||| || |||| |||     
gg cucc      gggu ggg cggAU GG  ACACG  UCU AU GACA guu    c
  -    cagauu    c   u     U  UU     --   U  -    u   aaac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr9: 125179688-125179798 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-199b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-199b-5p

Accession	MIMAT0015794
Description	Pongo pygmaeus ppy-miR-199b-5p mature miRNA
Sequence	31 - GUGUUUAGACUAUCUGUUC - 49
Evidence	not_experimental

Mature ppy-miR-199b-3p

Accession	MIMAT0015795
Description	Pongo pygmaeus ppy-miR-199b-3p mature miRNA
Sequence	66 - ACAGUAUUCUGCACAUUGGUUA - 87
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64