miRBase entry: ppy-mir-200a

Stem-loop ppy-mir-200a


Accession
MI0014861
Description
Pongo pygmaeus ppy-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ccgggccccugugagcaucuuaccggacagugcuggauuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugaccc
..((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))

Structure
cc   - c   g        -            -----------     a 
  ggg c ccu ugagcauc uuaccggacagu           gcugg u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
--   a u   a        C            CAAUcucaguu     c 


Annotation confidence Not enough data
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Genome context
chr1: 229422413-229422500 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-200a

Accession MIMAT0015796
Description Pongo pygmaeus ppy-miR-200a mature miRNA
Sequence 54 - UAACACUGUCUGGUAACGAUGU - 75
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64