miRBase entry: ppy-mir-217

Stem-loop ppy-mir-217

Accession

MI0014868

Description

Pongo pygmaeus ppy-mir-217 precursor miRNA

Gene family

MIPF0000077; mir-217

Sequence

aguauaauuauuacauaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAuaagaaucagccaccaucaguuccuaaugcauugccuucagcaucuaaacaag
.(((.......)))...((((..(((((.(.((.((.(((((.(((((((((((((...........)))..)))))))))).))))).)).)).).))))).))))...

Structure

aguauaauuauuacaua    uu     c c  a  C     C          --   Auaa 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU  UGG    g
                 ||||  ||||| | || || ||||| ||||||||||  |||    a
                 caaa  cuacg c uc gu acgua uccuugacua  acc    a
--------------gaa    -u     a u  c  u     a          cc   gacu

Annotation confidence Not enough data

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Genome context

chr2A: 55027671-55027780 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-217

Accession	MIMAT0015803
Description	Pongo pygmaeus ppy-miR-217 mature miRNA
Sequence	35 - UACUGCAUCAGGAACUGAUUGGA - 57
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64