miRBase entry: ppy-mir-296

Stem-loop ppy-mir-296

Accession

MI0014874

Description

Pongo pygmaeus ppy-mir-296 precursor miRNA

Gene family

MIPF0000159; mir-296

Sequence

aggacccuuccggAGGGCCCCCCCUCAAUCCUGUugugccuaauucaGAGGGUUGGGUGGAGGCUCUCCugaagggcucu
.(((((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).)))))).)))

Structure

a   -      c        C  C         G   ugc 
 gga cccuuc ggAGGGCC CC CUCAAUCCU Uug   c
 ||| |||||| |||||||| || ||||||||| |||   u
 ucu gggaag CCUCUCGG GG GGGUUGGGA Gac   a
-   c      u        A  U         -   uua

Annotation confidence Not enough data

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Genome context

chr20: 56914083-56914162 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-296

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-296-5p

Accession	MIMAT0015809
Description	Pongo pygmaeus ppy-miR-296-5p mature miRNA
Sequence	14 - AGGGCCCCCCCUCAAUCCUGU - 34
Evidence	not_experimental

Mature ppy-miR-296-3p

Accession	MIMAT0015810
Description	Pongo pygmaeus ppy-miR-296-3p mature miRNA
Sequence	48 - GAGGGUUGGGUGGAGGCUCUCC - 69
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64