Stem-loop sequence ppy-mir-329-2

Accession

MI0014897

Description

Pongo pygmaeus miR-329-2 stem-loop

Gene family

MIPF0000110; mir-329

Stem-loop

g      cu           uu ug   uuc      u  au 
 ugguac  gaagagagguu  c  ggu   uguuuc uu  u
 ||||||  |||||||||||  |  |||   |||||| ||   
 acuaug  cuuuucuccaa  g  cca   acaaag ag  g
-      ac           uu gu   --c      u  ga 

Genome context

• Coordinates (PPYG2): 14: 102588514-102588596 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppy-mir-329-2

• ppy-mir-379: 14: 102583478-102583544 [+]
• ppy-mir-411: 14: 102584737-102584832 [+]
• ppy-mir-299: 14: 102585203-102585265 [+]
• ppy-mir-380: 14: 102586431-102586490 [+]
• ppy-mir-1197: 14: 102586977-102587064 [+]
• ppy-mir-323: 14: 102587145-102587230 [+]
• ppy-mir-758: 14: 102587434-102587521 [+]
• ppy-mir-329-1: 14: 102588199-102588278 [+]
• ppy-mir-329-2: 14: 102588514-102588596 [+]
• ppy-mir-494: 14: 102591073-102591153 [+]
• ppy-mir-1193: 14: 102591485-102591597 [+]
• ppy-mir-543: 14: 102593436-102593513 [+]
• ppy-mir-495: 14: 102595205-102595283 [+]

Mature sequence ppy-miR-329

• Accession: MIMAT0015832
• Sequence: 52 - aacacaccugguuaaccucuuu - 73
• Evidence: not experimental

References

1. PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).