miRBase entry: ppy-mir-338

Stem-loop ppy-mir-338

Accession

MI0014902

Description

Pongo pygmaeus ppy-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

ucuccAACAAUAUCCUGGUGCUGAGUGaugacucaggcaacUCCAGCAUCAGUGAUUUUGUUGaaga
(((.((((((.(((((((((((((((.............))).))))))))).))).)))))).)))

Structure

   c      U   -         -   Gauga 
ucu cAACAA AUC CUGGUGCUG AGU     c
||| |||||| ||| ||||||||| |||     u
aga GUUGUU UAG GACUACGAC Uca     c
   a      U   U         C   acgga

Annotation confidence Not enough data

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Genome context

chr17: 71204205-71204271 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-338

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-338-5p

Accession	MIMAT0015840
Description	Pongo pygmaeus ppy-miR-338-5p mature miRNA
Sequence	6 - AACAAUAUCCUGGUGCUGAGUG - 27
Evidence	not_experimental

Mature ppy-miR-338-3p

Accession	MIMAT0015841
Description	Pongo pygmaeus ppy-miR-338-3p mature miRNA
Sequence	42 - UCCAGCAUCAGUGAUUUUGUUG - 63
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64