miRBase entry: ppy-mir-379

Stem-loop ppy-mir-379


Accession
MI0014927
Description
Pongo pygmaeus ppy-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

agagaUGGUAGACUAUGGAACGUAGGcguuaugauuuuugaccuauguaacaugguccacuaacucu
((((.((((.(((((((..(((((((((..........)).)))))))..))))))).)))).))))

Structure
    a    A       GA       -  uuau 
agag UGGU GACUAUG  ACGUAGG cg    g
|||| |||| |||||||  ||||||| ||     
ucuc auca cugguac  uguaucc gu    a
    a    c       aa       a  uuuu 


Annotation confidence Not enough data
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Genome context
chr14: 102583478-102583544 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ppy-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-379

Accession MIMAT0015869
Description Pongo pygmaeus ppy-miR-379 mature miRNA
Sequence 6 - UGGUAGACUAUGGAACGUAGG - 26
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64