Stem-loop sequence ppy-mir-380

Accession MI0014928
Description Pongo pygmaeus miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
aagau   u       ga       c   c 
     ggu gaccaua  acaugcg uau u
     ||| |||||||  ||||||| |||  
     uca cugguau  uguaugc gug c
--uuc   c       aa       u   u
Get sequence
Genome context
Coordinates (PPYG2) Overlapping transcripts
14: 102586431-102586490 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-380
ppy-mir-379 14: 102583478-102583544 [+]
ppy-mir-411 14: 102584737-102584832 [+]
ppy-mir-299 14: 102585203-102585265 [+]
ppy-mir-380 14: 102586431-102586490 [+]
ppy-mir-1197 14: 102586977-102587064 [+]
ppy-mir-323 14: 102587145-102587230 [+]
ppy-mir-758 14: 102587434-102587521 [+]
ppy-mir-329-1 14: 102588199-102588278 [+]
ppy-mir-329-2 14: 102588514-102588596 [+]
ppy-mir-494 14: 102591073-102591153 [+]
ppy-mir-1193 14: 102591485-102591597 [+]
ppy-mir-543 14: 102593436-102593513 [+]
ppy-mir-495 14: 102595205-102595283 [+]

Mature sequence ppy-miR-380

Accession MIMAT0015870
Sequence

40 -  

uauguaauaugguccacucuu

 - 60

Get sequence
Evidence not experimental

References

1
PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).