miRBase entry: ppy-mir-409

Stem-loop ppy-mir-409

Accession

MI0014933

Description

Pongo pygmaeus ppy-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

ugguacucggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCUuuucgguauca
((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))

Structure

      u       A    AC         -    - AUc 
ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
|||||| ||||||| ||||  ||||||||| |||| |    
acuaug gcuuuUC CCAA  GGCUCGUUG AAGc g   g
      -       C    GU         U    a cag

Annotation confidence Not enough data

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Genome context

chr14: 102628022-102628100 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ppy-mir-409

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-409-5p

Accession	MIMAT0015875
Description	Pongo pygmaeus ppy-miR-409-5p mature miRNA
Sequence	15 - AGGUUACCCGAGCAACUUUGCAU - 37
Evidence	not_experimental

Mature ppy-miR-409-3p

Accession	MIMAT0015876
Description	Pongo pygmaeus ppy-miR-409-3p mature miRNA
Sequence	47 - GAAUGUUGCUCGGUGAACCCCU - 68
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64