miRBase entry: ppy-mir-500

Stem-loop ppy-mir-500

Accession

MI0014973

Description

Pongo pygmaeus ppy-mir-500 precursor miRNA

Gene family

MIPF0000139; mir-500

Sequence

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcugucugaaugcaaugcaccugggcaaggauucugagagcgagagc
((((.(.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).).))))

Structure

    c c     -U         UAC       AGAg   ugu 
gcuc c cucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||| | |||||  |||||||||   |||||||    |||   u
cgag g gagag  uuaggaacg   gguccac    acg   g
    a c     uc         ---       -gua   uaa

Annotation confidence Not enough data

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Genome context

chrX: 50541281-50541364 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-500

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-500

Accession	MIMAT0015922
Description	Pongo pygmaeus ppy-miR-500 mature miRNA
Sequence	13 - UAAUCCUUGCUACCUGGGUGAGA - 35
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64