miRBase entry: ppy-mir-502

Stem-loop ppy-mir-502

Accession

MI0014975

Description

Pongo pygmaeus ppy-mir-502 precursor miRNA

Gene family

MIPF0000139; mir-500

Sequence

ugcucccccucucuaAUCCUUGCUAUCUGGGUGCUAgugcugucucaaugcAAUGCACCUGGGCAAGGAUUCAgagagggggagcu
.((((((((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))))))))))).

Structure

u             -         UAU        UAg   ugu 
 gcucccccucucu aAUCCUUGC   CUGGGUGC   ugc   c
 ||||||||||||| |||||||||   ||||||||   |||   u
 cgagggggagagA UUAGGAACG   GGUCCACG   Acg   c
u             C         ---        -UA   uaa

Annotation confidence Not enough data

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Genome context

chrX: 50547689-50547774 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppy-mir-502

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-502-5p

Accession	MIMAT0015924
Description	Pongo pygmaeus ppy-miR-502-5p mature miRNA
Sequence	16 - AUCCUUGCUAUCUGGGUGCUA - 36
Evidence	not_experimental

Mature ppy-miR-502-3p

Accession	MIMAT0015925
Description	Pongo pygmaeus ppy-miR-502-3p mature miRNA
Sequence	52 - AAUGCACCUGGGCAAGGAUUCA - 73
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64