miRBase entry: ppy-mir-514

Stem-loop ppy-mir-514


Accession
MI0014994
Description
Pongo pygmaeus ppy-mir-514 precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

aacauguugucugugguacccuacucuggagaguggcaaucauguguaauuaaauuugAUUGACACCUCUGUGAGUAGAguaacgcaugacacauacg
...((((.(((((((.(((.(((((((((((.(((.((((((.((........)).)))))).)))))))).)))))).))).)))).)))))))...

Structure
aac    u   -    g   c      -     a   g      u  gua 
   augu guc ugug uac cuacuc uggag gug caauca gu   a
   |||| ||| |||| ||| |||||| ||||| ||| |||||| ||    
   uaca cag acgc aug GAUGAG GUCUC CAC GUUAgu ua   u
gca    -   u    a   A      U     -   A      u  aau 


Annotation confidence Not enough data
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Genome context
chrX: 147162781-147162878 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-514
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-514

Accession MIMAT0015942
Description Pongo pygmaeus ppy-miR-514 mature miRNA
Sequence 59 - AUUGACACCUCUGUGAGUAGA - 79
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64