miRBase entry: ppy-mir-515-1

Stem-loop ppy-mir-515-1

Accession

MI0014997

Description

Pongo pygmaeus ppy-mir-515-1 precursor miRNA

Gene family

MIPF0000020; mir-515

Literature search

1 open access papers mention ppy-mir-515-1
(2 sentences)

Sequence

ucucaugcagucaUUCUCCAAAAGAAAGCACUUUCUGuugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugaga
(((((.(((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))).)))))

Structure

     u     c  U           A    UU      gu 
ucuca gcagu aU CUCCAAAAGAA GCAC  UCUGuu  c
||||| ||||| || ||||||||||| ||||  ||||||  u
agagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
     u     U  C           C    --      aa

Annotation confidence Not enough data

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Genome context

chr19: 55460257-55460339 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppy-mir-515-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-515-5p

Accession	MIMAT0015943
Description	Pongo pygmaeus ppy-miR-515-5p mature miRNA
Sequence	14 - UUCUCCAAAAGAAAGCACUUUCUG - 37
Evidence	not_experimental

Mature ppy-miR-515-3p

Accession	MIMAT0015944
Description	Pongo pygmaeus ppy-miR-515-3p mature miRNA
Sequence	51 - GAGUGCCUUCUUUUGGAGCGUU - 72
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64