miRBase entry: ppy-mir-516b-2

Stem-loop ppy-mir-516b-2

Accession

MI0015002

Description

Pongo pygmaeus ppy-mir-516b-2 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucucaugagugugaccAUCUGGAGGUAAGAAGCACUUUuuguuuugugaaagaaaagaaagugcuuccuuucagagggauuacucuuugaga
(((((.(((((...((.((((((((...((((((((((((.((((.....)))).))))))))))))))))))))))...)))))..)))))

Structure

     -u     uga  A        UAA            g    g 
ucuca  gagug   cc UCUGGAGG   GAAGCACUUUuu uuuu u
|||||  |||||   || ||||||||   |||||||||||| |||| g
agagu  cucau   gg agacuuuc   cuucgugaaaga aaga a
     uu     uag  -        ---            a    a

Annotation confidence Not enough data

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Genome context

chr19: 55501004-55501095 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-516b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-516b

Accession	MIMAT0015947
Description	Pongo pygmaeus ppy-miR-516b mature miRNA
Sequence	17 - AUCUGGAGGUAAGAAGCACUUU - 38
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64