miRBase entry: ppy-mir-518a-1

Stem-loop ppy-mir-518a-1


Accession
MI0015006
Description
Pongo pygmaeus ppy-mir-518a-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucucaugcugugacuCUGCAAAGGGAAGCCCUUUCuguugucuaaaagaaaaGAAAGCGCUUCCCUUUGGAGUGuuacgguuugaga
(((((.((((((((.((.(((((((((((.((((((....(((...)))..)))))).))))))))))).)).)))))))).)))))

Structure
     u        u  G           C      guug   a 
ucuca gcugugac CU CAAAGGGAAGC CUUUCu    ucu  
||||| |||||||| || ||||||||||| ||||||    ||| a
agagu uggcauuG GA GUUUCCCUUCG GAAAGa    aga  
     u        U  G           C      --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 55505640-55505726 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppy-mir-518a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-518a-5p

Accession MIMAT0015951
Description Pongo pygmaeus ppy-miR-518a-5p mature miRNA
Sequence 16 - CUGCAAAGGGAAGCCCUUUC - 35
Evidence not_experimental

Mature ppy-miR-518a-3p

Accession MIMAT0015952
Description Pongo pygmaeus ppy-miR-518a-3p mature miRNA
Sequence 53 - GAAAGCGCUUCCCUUUGGAGUG - 74
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64