Stem-loop sequence ppy-mir-518f

Accession MI0015012
Description Pongo pygmaeus miR-518f stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
     ugcu    c               a     ---    gu 
ucuca    guga ccucuagagggaagc cuuuc   ucuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu ggagauuucucuucg gaaag   agaa  u
     uucu    a               c     aaa    aa
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Genome context
Coordinates (PPYG2) Overlapping transcripts
19: 55475773-55475859 [+]
intergenic
19_random: 4021101-4021187 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-518f
ppy-mir-520a 19: 55466122-55466202 [+]
ppy-mir-526b 19: 55469606-55469691 [+]
ppy-mir-518b 19: 55470706-55470788 [+]
ppy-mir-525 19: 55473271-55473356 [+]
ppy-mir-523 19: 55474120-55474206 [+]
ppy-mir-518f 19: 55475773-55475859 [+]
ppy-mir-520b 19: 55476981-55477041 [+]
ppy-mir-518e 19: 55480152-55480238 [+]
ppy-mir-520c 19: 55481357-55481443 [+]
ppy-mir-518c 19: 55482645-55482745 [+]
ppy-mir-524 19: 55484611-55484697 [+]

Mature sequence ppy-miR-518f

Accession MIMAT0015958
Sequence

53 -  

gaaagcgcuucucuuuagagg

 - 73

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Evidence not experimental

References

1
PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).