miRBase entry: ppy-mir-519d

Stem-loop ppy-mir-519d


Accession
MI0015017
Description
Pongo pygmaeus ppy-mir-519d precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

caugcugugacccuccaaagggaagcacuuccuguuuguuuucucuucaaCAAAGUGCCUCCCUUUAGAGUGuuaccguuuggga
((.((.(((((.(((.(((((((.((((((..((((.(........).)))))))))).))))))).))).))))).)).))...

Structure
---  u  u     c   c       a      cc    u uuu 
   ca gc gugac cuc aaaggga gcacuu  uguu g   u
   || || ||||| ||| ||||||| ||||||  |||| |    
   gu ug cauuG GAG UUUCCCU CGUGAA  ACaa u   c
agg  u  c     U   A       C      --    c ucu 


Annotation confidence Not enough data
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Genome context
chr19: 55486957-55487041 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ppy-mir-519d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-519d

Accession MIMAT0015964
Description Pongo pygmaeus ppy-miR-519d mature miRNA
Sequence 51 - CAAAGUGCCUCCCUUUAGAGUG - 72
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64