Stem-loop sequence ppy-mir-520b

Accession MI0015020
Description Pongo pygmaeus miR-520b stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
                       guug  u 
cccucuacagggaagcacuuucu    uc g
|||||||||||||||||||||||    || a
gggagauguuccuucgugaaaga    ag a
                       --aa  a
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Genome context
Coordinates (PPYG2) Overlapping transcripts
19: 55476981-55477041 [+]
intergenic
19_random: 4022309-4022369 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-520b
ppy-mir-526b 19: 55469606-55469691 [+]
ppy-mir-518b 19: 55470706-55470788 [+]
ppy-mir-525 19: 55473271-55473356 [+]
ppy-mir-523 19: 55474120-55474206 [+]
ppy-mir-518f 19: 55475773-55475859 [+]
ppy-mir-520b 19: 55476981-55477041 [+]
ppy-mir-518e 19: 55480152-55480238 [+]
ppy-mir-520c 19: 55481357-55481443 [+]
ppy-mir-518c 19: 55482645-55482745 [+]
ppy-mir-524 19: 55484611-55484697 [+]
ppy-mir-517a 19: 55485875-55485961 [+]
ppy-mir-519d 19: 55486957-55487041 [+]

Mature sequence ppy-miR-520b

Accession MIMAT0015968
Sequence

41 -  

aaagugcuuccuuguagaggg

 - 61

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Evidence not experimental

References

1
PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).