miRBase entry: ppy-mir-520d

Stem-loop ppy-mir-520d

Accession

MI0015022

Description

Pongo pygmaeus ppy-mir-520d precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucucaugcugugacuCUACAAAGGGAAGCCCUUUCuguugucuaaaaaaaaagAAAGUGCUUCUCUUUGGUGGGUuacgguuugaga
(((((.((((((((((..(((((((((((.((((((...............)))))).)))))))))))..)))))))))).)))))

Structure

     u          UA           C      guuguc 
ucuca gcugugacuC  CAAAGGGAAGC CUUUCu      u
||||| ||||||||||  ||||||||||| ||||||      a
agagu uggcauUGGG  GUUUCUCUUCG GAAAga      a
     u          UG           U      aaaaaa

Annotation confidence Not enough data

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Genome context

chr19: 55491990-55492076 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ppy-mir-520d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520d-5p

Accession	MIMAT0015971
Description	Pongo pygmaeus ppy-miR-520d-5p mature miRNA
Sequence	16 - CUACAAAGGGAAGCCCUUUC - 35
Evidence	not_experimental

Mature ppy-miR-520d-3p

Accession	MIMAT0015972
Description	Pongo pygmaeus ppy-miR-520d-3p mature miRNA
Sequence	54 - AAAGUGCUUCUCUUUGGUGGGU - 75
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64