miRBase entry: ppy-mir-520e

Stem-loop ppy-mir-520e

Accession

MI0015023

Description

Pongo pygmaeus ppy-mir-520e precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucuccugcugugacacucaagauggaagcaauuucuguugucugaaaggaaagAAAGUGCUUCCUUUUUGAGGGuuacuguuugaga
((((..((.(((((.(((((((.(((((((.(((((....(((...)))..))))).))))))).))))))).))))).))..))))

Structure

    cu  u     a       u       a     guug   g 
ucuc  gc gugac cucaaga ggaagca uuucu    ucu  
||||  || ||||| ||||||| ||||||| |||||    ||| a
agag  ug cauuG GAGUUUU CCUUCGU AAAga    gga  
    uu  u     G       U       G     --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55450076-55450162 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppy-mir-520e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520e

Accession	MIMAT0015973
Description	Pongo pygmaeus ppy-miR-520e mature miRNA
Sequence	54 - AAAGUGCUUCCUUUUUGAGGG - 74
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64