miRBase entry: ppy-mir-520h

Stem-loop ppy-mir-520h

Accession

MI0015026

Description

Pongo pygmaeus ppy-mir-520h precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucccacgcugugacccucuagaggaagcacuuucuguuuguuguccgagagaaaACAAAGUGCUUCCCUUUAGAGUguuacguuuggga
(((((.((.(((((.(((((((((((((((((..(((((.............))))))))))))).))))))))).))))))).)))))

Structure

     c  u     c         -        uc     guugu 
uccca gc gugac cucuagagg aagcacuu  uguuu     c
||||| || ||||| ||||||||| ||||||||  |||||     c
agggu ug cauug GAGAUUUCC UUCGUGAA  ACAaa     g
     u  -     U         C        --     agaga

Annotation confidence Not enough data

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Genome context

chr19: 55517007-55517095 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-520h

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520h

Accession	MIMAT0015976
Description	Pongo pygmaeus ppy-miR-520h mature miRNA
Sequence	55 - ACAAAGUGCUUCCCUUUAGAGU - 76
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64