miRBase entry: ppy-mir-521-2

Stem-loop ppy-mir-521-2


Accession
MI0015028
Description
Pongo pygmaeus ppy-mir-521-2 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucucaggcugugacucuccaaagggaagaacuuucuguugucuaaaagaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugaga
(((((.((.(((((.(((.(((((((((..(.((((....(((........)))..)))).)..))))))))).))).))))).)).)))))

Structure
     g  u     u   c         aa u    guug   aaa 
ucuca gc gugac cuc aaagggaag  c uucu    ucu   a
||||| || ||||| ||| |||||||||  | ||||    |||    
agagu ug cauUG GAG UUUCCCUUC  G AAga    aga   g
     g  c     U   A         AC C    --aa   aaa 


Annotation confidence Not enough data
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Genome context
chr19: 55490265-55490356 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ppy-mir-521-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-521

Accession MIMAT0015977
Description Pongo pygmaeus ppy-miR-521 mature miRNA
Sequence 59 - AACGCACUUCCCUUUAGAGUGU - 80
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64