Stem-loop ppy-mir-539

Accession

MI0015038

Description

Pongo pygmaeus ppy-mir-539 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

auacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuuuauuuaugaugaaucauacaaggacaauuucuuuuugaguau
(((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))))

Structure

                 A      G    -    - uuu 
auacuugaGGAGAAAUU UCCUUG UGUG Uucg c   a
||||||||||||||||| |||||| |||| |||| |   u
uaugaguuuuucuuuaa aggaac auac aagu g   u
                 c      -    u    a uau 

Annotation confidence Not enough data

Genome context

chr14: 102609453-102609530 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from ppy-mir-539

Mature ppy-miR-539

• Accession: MIMAT0015989
• Description: Pongo pygmaeus ppy-miR-539 mature miRNA
• Sequence: 9 - GGAGAAAUUAUCCUUGGUGUGU - 30
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64