Stem-loop sequence ppy-mir-539

AccessionMI0015038 (change log)
DescriptionPongo pygmaeus miR-539 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop
        ug          a      g    -    - uuu 
5' auacu  aggagaaauu uccuug ugug uucg c   a
   |||||  |||||||||| |||||| |||| |||| |   u
3' uauga  uuuucuuuaa aggaac auac aagu g   u
        gu          c      -    u    a uau 
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Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chr14: 102609453-102609530 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-539
ppy-mir-376cchr14: 102601818-102601883 [+]
ppy-mir-376a-2chr14: 102602202-102602281 [+]
ppy-mir-654chr14: 102602352-102602432 [+]
ppy-mir-376bchr14: 102602569-102602668 [+]
ppy-mir-376a-1chr14: 102602915-102602982 [+]
ppy-mir-300chr14: 102603492-102603574 [+]
ppy-mir-1185-1chr14: 102605109-102605194 [+]
ppy-mir-1185-2chr14: 102606330-102606415 [+]
ppy-mir-381chr14: 102608058-102608132 [+]
ppy-mir-487bchr14: 102608591-102608674 [+]
ppy-mir-539chr14: 102609453-102609530 [+]
ppy-mir-889chr14: 102610033-102610111 [+]
ppy-mir-544chr14: 102610806-102610896 [+]
ppy-mir-655chr14: 102611698-102611794 [+]
ppy-mir-487achr14: 102614611-102614690 [+]
ppy-mir-382chr14: 102616490-102616565 [+]
ppy-mir-134chr14: 102616871-102616943 [+]
ppy-mir-668chr14: 102617958-102618024 [+]
ppy-mir-485chr14: 102618120-102618192 [+]
ppy-mir-453chr14: 102618891-102618970 [+]
Database links

Mature sequence ppy-miR-539

Accession MIMAT0015989
Sequence

9 - 

ggagaaauuauccuuggugugu

 - 30

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Evidence not experimental

References

1