Stem-loop ppy-mir-542

Accession

MI0015040

Description

Pongo pygmaeus ppy-mir-542 precursor miRNA

Gene family

MIPF0000185; mir-542

Sequence

cagaucucagacaucUCGGGGAUCAUCAUGUCACGAGAuaccagugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagccacucaucuuc
....((((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))).............

Structure

---------caga        auc    GG    UCA         -A   c 
             ucucagac   UCGG  AUCA   UGUCACGAG  uac a
             ||||||||   ||||  ||||   |||||||||  |||  
             agggucug   AGUC  UAGU   ACAGUGUuc  gug g
cuucuacucaccg        gAA    AA    UAG         ac   u 

Annotation confidence Not enough data

Genome context

chrX: 134000586-134000681 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-542

Mature ppy-miR-542-5p

• Accession: MIMAT0015991
• Description: Pongo pygmaeus ppy-miR-542-5p mature miRNA
• Sequence: 16 - UCGGGGAUCAUCAUGUCACGAGA - 38
• Evidence: not_experimental

Mature ppy-miR-542-3p

• Accession: MIMAT0015992
• Description: Pongo pygmaeus ppy-miR-542-3p mature miRNA
• Sequence: 53 - UGUGACAGAUUGAUAACUGAAA - 74
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64