Stem-loop sequence ppy-mir-542

Accession MI0015040
Description Pongo pygmaeus miR-542 stem-loop
Gene family MIPF0000185; mir-542
Stem-loop 
---------caga        auc    gg    uca         -a   c 
             ucucagac   ucgg  auca   ugucacgag  uac a
             ||||||||   ||||  ||||   |||||||||  |||  
             agggucug   aguc  uagu   acaguguuc  gug g
cuucuacucaccg        gaa    aa    uag         ac   u
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Genome context
Coordinates (PPYG2) Overlapping transcripts
X: 134000586-134000681 [-]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-542
ppy-mir-424 X: 134005869-134005966 [-]
ppy-mir-503 X: 134005583-134005653 [-]
ppy-mir-542 X: 134000586-134000681 [-]
ppy-mir-450a-2 X: 133999749-133999848 [-]
ppy-mir-450a-1 X: 133999582-133999672 [-]
ppy-mir-450b X: 133999430-133999507 [-]

Mature sequence ppy-miR-542-5p

Accession MIMAT0015991
Sequence

16 -  

ucggggaucaucaugucacgaga

 - 38

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Evidence not experimental

Mature sequence ppy-miR-542-3p

Accession MIMAT0015992
Sequence

53 -  

ugugacagauugauaacugaaa

 - 74

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Evidence not experimental

References

1
PMID:20214803 "Genome-wide comparative analysis of microRNAs in three non-human primates" Brameier M BMC Res Notes. 3:64(2010).