miRBase entry: ppy-mir-646

Stem-loop ppy-mir-646


Accession
MI0015122
Description
Pongo pygmaeus ppy-mir-646 precursor miRNA
Gene family
MIPF0000605; mir-646


Sequence

gaucaggagucugccacuggagucggcacgccugcuuuucagcugugaucccagaagaggAAGCGGCUGCCUCUGAGGCcucaggcucagu
......(((((((...((((((.((((.(((.(.((((((.............)))))).).))))))).)))).))....)))))))...

Structure
gaucag       -cca  -    u    a   c g      agcug 
      gagucug    cu ggag cggc cgc u cuuuuc     u
      |||||||    || |||| |||| ||| | ||||||     g
      cucggac    GA UCUC GUCG GCG A gagaag     a
---uga       ucCG  G    C    -   A g      acccu 


Annotation confidence Not enough data
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Genome context
chr20: 58446603-58446693 [+]

Database links

Mature ppy-miR-646

Accession MIMAT0016080
Description Pongo pygmaeus ppy-miR-646 mature miRNA
Sequence 61 - AAGCGGCUGCCUCUGAGGC - 79
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64