miRBase entry: ppy-mir-888

Stem-loop ppy-mir-888


Accession
MI0015158
Description
Pongo pygmaeus ppy-mir-888 precursor miRNA
Gene family
MIPF0000386; mir-743


Sequence

ggcagugcucUACUCAAAAAGCUGUGAGUCAcuuagauuacaugugacugacaccucuuugggugaaggaaggcuca
(((..(.((.((((((((.((.(((.((((((...........)))))).))).)).)))))))).)).)..)))..

Structure
--   ag g  c        A  C   G      uuag 
  ggc  u cu UACUCAAA AG UGU AGUCAc    a
  |||  | || |||||||| || ||| ||||||    u
  ucg  a ga guggguuu uc aca ucagug    u
ac   ga g  a        c  c   g      uaca 


Annotation confidence Not enough data
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Genome context
chrX: 145868681-145868757 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppy-mir-888
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-888

Accession MIMAT0016123
Description Pongo pygmaeus ppy-miR-888 mature miRNA
Sequence 11 - UACUCAAAAAGCUGUGAGUCA - 31
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64