Stem-loop ppy-mir-1250

Accession

MI0015208

Description

Pongo pygmaeus ppy-mir-1250 precursor miRNA

Gene family

MIPF0000696; mir-1250

Sequence

cugucccgcuggccuggcaggugACGGUGCUGGAUGUGGCCUUUuugccuuuuccaaaggccacauuuuccagcccauucacccuuccagagcccucugagguggcccaggc
(((..((((((((((((..(((((.((.((((((((((((((((...........))))))))))...))))))))..)))))...)))).)))......)))))..)))..

Structure

--   uc     ------   -    -ca     -C  U      ---          uugc 
  cug  ccgcu      ggc cugg   ggugA  GG GCUGGA   UGUGGCCUUU    c
  |||  |||||      ||| ||||   |||||  || ||||||   ||||||||||    u
  gac  ggugg      ccg gacc   ccacu  cc cgaccu   acaccggaaa    u
cg   cc     agucuc   a    uuc     ua  -      uuu          ccuu 

Annotation confidence Not enough data

Genome context

chr17: 71211623-71211734 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-1250

Mature ppy-miR-1250

• Accession: MIMAT0016175
• Description: Pongo pygmaeus ppy-miR-1250 mature miRNA
• Sequence: 24 - ACGGUGCUGGAUGUGGCCUUU - 44
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64