miRBase entry: sja-mir-1

Stem-loop sja-mir-1


Accession
MI0015282
Description
Schistosoma japonicum sja-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
11 open access papers mention sja-mir-1
(60 sentences)

Sequence

caaaaguaguauucauuauaUGGAAUGUGGCGAAGUAUGGUCuacaguugcuagaaucaucuuuauaugaagaguauucacuuuu
.(((((((((((((.((((((((((((((((((.(((.....)))..))))))....))).))))))))).))))))).))))))

Structure
c      -       a         -   ----      -A   U 
 aaaagu aguauuc uuauaUGGA AUG    UGGCGA  GUA G
 |||||| ||||||| ||||||||| |||    ||||||  ||| G
 uuuuca uuaugag aguauauuu uac    aucguu  cau U
-      c       a         c   uaag      ga   C 


Annotation confidence Not enough data
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Genome context
CABF01001061.1: 9-93 [+]

Database links

Mature sja-miR-1

Accession MIMAT0016244
Description Schistosoma japonicum sja-miR-1 mature miRNA
Sequence 21 - UGGAAUGUGGCGAAGUAUGGUC - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596