Stem-loop sequence sja-mir-1

Accession

MI0015282 (change log)

Description

Schistosoma japonicum miR-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

11 open access papers mention sja-mir-1
(60 sentences)

Stem-loop

   c      -       a         -   ----      agua  g 
5'  aaaagu aguauuc uuauaugga aug    uggcga    ug u
    |||||| ||||||| ||||||||| |||    ||||||    || c
3'  uuuuca uuaugag aguauauuu uac    aucguu    ac u
   -      c       a         c   uaag      ---g  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01001061.1: 9-93 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015282

Mature sequence sja-miR-1

• Accession: MIMAT0016244
• Sequence: 21 - uggaauguggcgaaguaugguc - 42
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).