miRBase entry: sja-mir-2a

Stem-loop sja-mir-2a


Accession
MI0015283
Description
Schistosoma japonicum sja-mir-2a precursor miRNA
Gene family
MIPF0001838; mir-2_2

Literature search
9 open access papers mention sja-mir-2a
(33 sentences)

Sequence

accuuuugcaccgCAGUCAAUAUUGGCUGAUGGCAuuguuuuauugUCACAGCCAGUAUUGAUGAACGggguaauagg
.(((.((((.(((..((((((((((((((.(((((.........)))))))))))))))))))...))).)))).)))

Structure
a   u    a   -CA              A     uug 
 ccu uugc ccg   GUCAAUAUUGGCUG UGGCA   u
 ||| |||| |||   |||||||||||||| |||||   u
 gga aaug gGC   UAGUUAUGACCGAC ACUgu   u
-   u    g   AAG              -     uau 


Annotation confidence Not enough data
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Genome context
CABF01007682.1: 2964-3041 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sja-mir-2a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-2a-5p

Accession MIMAT0016245
Description Schistosoma japonicum sja-miR-2a-5p mature miRNA
Sequence 14 - CAGUCAAUAUUGGCUGAUGGCA - 35
Evidence experimental
Illumina [1]

Mature sja-miR-2a-3p

Accession MIMAT0016246
Description Schistosoma japonicum sja-miR-2a-3p mature miRNA
Sequence 47 - UCACAGCCAGUAUUGAUGAACG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596