Stem-loop sequence sja-mir-2a

Accession

MI0015283 (change log)

Description

Schistosoma japonicum miR-2a stem-loop

Gene family

MIPF0001838; mir-2_2

Literature search

9 open access papers mention sja-mir-2a
(31 sentences)

Stem-loop

   a   u    a   -ca              a     uug 
5'  ccu uugc ccg   gucaauauuggcug uggca   u
    ||| |||| |||   |||||||||||||| |||||   u
3'  gga aaug ggc   uaguuaugaccgac acugu   u
   -   u    g   aag              -     uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01007682.1: 2964-3041 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sja-mir-2a

• sja-mir-71a: CABF01007682.1: 3056-3135 [-]
• sja-mir-2a: CABF01007682.1: 2964-3041 [-]
• sja-mir-2b: CABF01007682.1: 2869-2946 [-]
• sja-mir-2e: CABF01007682.1: 2769-2851 [-]

Database links

• miRBase Tracker:MI0015283

Mature sequence sja-miR-2a-5p

• Accession: MIMAT0016245
• Sequence: 14 - cagucaauauuggcugauggca - 35
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-2a-3p

• Accession: MIMAT0016246
• Sequence: 47 - ucacagccaguauugaugaacg - 68
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).