Stem-loop sequence sja-mir-2b

Accession

MI0015284 (change log)

Description

Schistosoma japonicum miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

8 open access papers mention sja-mir-2b
(28 sentences)

Stem-loop

   --      u  - c       --   a      gc  acgu 
5'   aggugg gc g gucucaa  agg cuguga  ca    a
     |||||| || | |||||||  ||| ||||||  ||     
3'   uccauc cg c caggguu  ucc gacacu  gu    a
   cg      -  a a       cg   c      au  cauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01007682.1: 2869-2946 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sja-mir-2b

• sja-mir-71a: CABF01007682.1: 3056-3135 [-]
• sja-mir-2a: CABF01007682.1: 2964-3041 [-]
• sja-mir-2b: CABF01007682.1: 2869-2946 [-]
• sja-mir-2e: CABF01007682.1: 2769-2851 [-]

Database links

• miRBase Tracker:MI0015284

Mature sequence sja-miR-2b-5p

• Accession: MIMAT0016247
• Sequence: 11 - cgucucaaaggacugugagcca - 32
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-2b-3p

• Accession: MIMAT0016248
• Sequence: 45 - uaucacagcccugcuugggacaca - 68
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).