miRBase entry: sja-mir-8

Stem-loop sja-mir-8


Accession
MI0015286
Description
Schistosoma japonicum sja-mir-8 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
4 open access papers mention sja-mir-8
(16 sentences)

Sequence

augaguauggCAUCUUACUAAUAGUAUUUGAuaaagaauuuucUAAUACUGUUAGGUAAAGAUGCCagcucacuuc
.(((((.(((((((((.(((((((((((.((..........)).)))))))))))...))))))))))))))....

Structure
---a     a         --A           U  uaaa 
    ugagu uggCAUCUU   CUAAUAGUAUU GA    g
    ||||| |||||||||   ||||||||||| ||     
    acucg aCCGUAGAA   GAUUGUCAUAA cu    a
cuuc     -         AUG           U  uuua 


Annotation confidence Not enough data
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Genome context
CABF01051237.1: 644-719 [+]

Database links

Mature sja-miR-8-5p

Accession MIMAT0016251
Description Schistosoma japonicum sja-miR-8-5p mature miRNA
Sequence 11 - CAUCUUACUAAUAGUAUUUGA - 31
Evidence experimental
Illumina [1]

Mature sja-miR-8-3p

Accession MIMAT0016252
Description Schistosoma japonicum sja-miR-8-3p mature miRNA
Sequence 44 - UAAUACUGUUAGGUAAAGAUGCC - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596