miRBase entry: sja-mir-31

Stem-loop sja-mir-31


Accession
MI0015288
Description
Schistosoma japonicum sja-mir-31 precursor miRNA
Gene family
MIPF0001803; mir-31_2

Literature search
4 open access papers mention sja-mir-31
(43 sentences)

Sequence

uauuuguuguUGGCAAGAUUACGGCGAAGCUGAaucaaauuuaaaauguuucAGCUUCACUUUAUUUUGCCAAuaaagguagc
(((((.(((((((((((((...((.(((((((((.((.........)).))))))))).))..))))))))))))))))))..

Structure
--     g             UAC  C         u  aau 
  uauuu uuguUGGCAAGAU   GG GAAGCUGAa ca   u
  ||||| |||||||||||||   || ||||||||| ||   u
  augga aauAACCGUUUUA   UC CUUCGAcuu gu   a
cg     -             -UU  A         u  aaa 


Annotation confidence Not enough data
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Genome context
CABF01027063.1: 2598-2680 [-]

Database links

Mature sja-miR-31-5p

Accession MIMAT0016255
Description Schistosoma japonicum sja-miR-31-5p mature miRNA
Sequence 11 - UGGCAAGAUUACGGCGAAGCUGA - 33
Evidence experimental
Illumina [1]

Mature sja-miR-31-3p

Accession MIMAT0016256
Description Schistosoma japonicum sja-miR-31-3p mature miRNA
Sequence 53 - AGCUUCACUUUAUUUUGCCAA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596