Stem-loop sja-mir-36

Accession

MI0015289

Description

Schistosoma japonicum sja-mir-36 precursor miRNA

Gene family

MIPF0000096; mir-36

Literature search

8 open access papers mention sja-mir-36
(20 sentences)

Sequence

uauagcuugcGAAGAAUGCCGAUCCGGUCAGCCauucaacaaucuaucaguaauaaacggCCACCGGGUAGACAUUCAUUCGCaagauauuau
.....(((((((((((((.(.(((((((..(((.........................))).))))))).).))))).)))))))).......

Structure

--uauag        -     C G       CA   auucaacaauc 
       cuugcGAA GAAUG C AUCCGGU  GCC           u
       |||||||| ||||| | |||||||  |||           a
       gaaCGCUU CUUAC G UGGGCCA  Cgg           u
uauuaua        A     A A       -C   caaauaaugac 

Annotation confidence Not enough data

Genome context

CABF01004852.1: 272-364 [-]

Mature sja-miR-36-5p

• Accession: MIMAT0016257
• Description: Schistosoma japonicum sja-miR-36-5p mature miRNA
• Sequence: 11 - GAAGAAUGCCGAUCCGGUCAGCC - 33
• Evidence: experimental ; Illumina [1]

Mature sja-miR-36-3p

• Accession: MIMAT0016258
• Description: Schistosoma japonicum sja-miR-36-3p mature miRNA
• Sequence: 61 - CCACCGGGUAGACAUUCAUUCGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596