Stem-loop sequence sja-mir-124

Accession

MI0015292 (change log)

Description

Schistosoma japonicum miR-124 stem-loop

Gene family

MIPF0000021; mir-124

Literature search

8 open access papers mention sja-mir-124
(21 sentences)

Stem-loop

   --uaua  u   c     u     au         ---     aaaa   a 
5'       ug aug cauuu ccgcg  ugccuugau   uuguu    gaa a
         || ||| ||||| |||||  |||||||||   |||||    ||| u
3'       ac uac guaag ggcgc  acggaauua   aacaa    cuu g
   cguggc  c   u     u     --         uaa     --ca   a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01021699.1: 6318-6413 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015292

Mature sequence sja-miR-124-5p

• Accession: MIMAT0016262
• Sequence: 11 - ccauuuuccgcgauugccuugauuu - 35
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-124-3p

• Accession: MIMAT0016263
• Sequence: 66 - uaaggcacgcggugaauguca - 86
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).