Stem-loop sequence sja-mir-133

Accession

MI0015293 (change log)

Description

Schistosoma japonicum miR-133 stem-loop

Literature search

1 open access papers mention sja-mir-133
(3 sentences)

Stem-loop

   caugcuguucuuaugagauuuuggucccuaucaaccagcuguaguggauagcuuca   u a     a  -  -uacu    uucu    gcc 
5'                                                         uca c gacau cu gu     uguu    auau   u
                                                           ||| | ||||| || ||     ||||    ||||   u
3'                                                         agu g uugua ga ca     auaa    ugua   u
   ---------------------------------------------auaagguuuaa   u a     a  a  uuuau    uuuu    agc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01070535.1: 1141-1282 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015293

Mature sequence sja-miR-133

• Accession: MIMAT0016264
• Sequence: 21 - uuggucccuaucaaccagcugu - 42
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).