Stem-loop sja-mir-190

Accession

MI0015294

Description

Schistosoma japonicum sja-mir-190 precursor miRNA

Gene family

MIPF0001853; mir-190_2

Literature search

3 open access papers mention sja-mir-190
(5 sentences)

Sequence

cgacaguaaacuggucgaugUGAUAUGUAUGGGUUACUUGGUGucagcggauaacauguuuuauucgccauuaagcaauacacCAGUGACCAGACAUAUCCCUaucgcuuaguuuagauccuc
......((((((((.(((((.(((((((...(((((((.(((((..((((((((......))))))))...........))))))))))))..)))))))..))))).)))))))).......

Structure

-cgacag        u     -U       AUG       U     ---------ca        ca 
       uaaacugg cgaug  GAUAUGU   GGUUACU GGUGu           gcggauaa  u
       |||||||| |||||  |||||||   ||||||| |||||           ||||||||   
       auuugauu gcuaU  CUAUACA   CCAGUGA Ccaca           cgcuuauu  g
cuccuag        c     CC       -GA       -     uaacgaauuac        uu 

Annotation confidence Not enough data

Genome context

CABF01003857.1: 2236-2358 [+]

Mature sja-miR-190-5p

• Accession: MIMAT0016265
• Description: Schistosoma japonicum sja-miR-190-5p mature miRNA
• Sequence: 21 - UGAUAUGUAUGGGUUACUUGGUG - 43
• Evidence: experimental ; Illumina [1]

Mature sja-miR-190-3p

• Accession: MIMAT0016266
• Description: Schistosoma japonicum sja-miR-190-3p mature miRNA
• Sequence: 84 - CAGUGACCAGACAUAUCCCU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596