Stem-loop sequence sja-mir-190

Accession

MI0015294 (change log)

Description

Schistosoma japonicum miR-190 stem-loop

Gene family

MIPF0001853; mir-190_2

Literature search

3 open access papers mention sja-mir-190
(5 sentences)

Stem-loop

   -cgacag        u     -u       aug       u     ---------ca        ca 
5'        uaaacugg cgaug  gauaugu   gguuacu ggugu           gcggauaa  u
          |||||||| |||||  |||||||   ||||||| |||||           ||||||||   
3'        auuugauu gcuau  cuauaca   ccaguga ccaca           cgcuuauu  g
   cuccuag        c     cc       -ga       -     uaacgaauuac        uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01003857.1: 2236-2358 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015294

Mature sequence sja-miR-190-5p

• Accession: MIMAT0016265
• Sequence: 21 - ugauauguauggguuacuuggug - 43
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-190-3p

• Accession: MIMAT0016266
• Sequence: 84 - cagugaccagacauaucccu - 103
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).