miRBase entry: sja-mir-277

Stem-loop sja-mir-277


Accession
MI0015296
Description
Schistosoma japonicum sja-mir-277 precursor miRNA

Literature search
4 open access papers mention sja-mir-277
(23 sentences)

Sequence

auaannnnnnnnnnauauugUAAAUGCAUUUUCUGGCCCGuaacuaagacacaaugaacauccuuaucuuugauaguuuuuaaaaguuaaguuuuguuuugucuugucaauguaauagauguccuuucuuuucagugauggg
.........................(((...((((...(((...(((((((....(((((..((((.((((...........)))).))))...))))))))))))...)))...)))))))(((.((........)).)))

Structure
auaannnnnnnnnnauauugUAAAU   UUU    GCC   aac       caau     -uc    u    gaua 
                         GCA   UCUG   CGu   uaagaca    gaaca   cuua cuuu    g
                         |||   ||||   |||   |||||||    |||||   |||| ||||    u
                         ugu   agau   gua   guucugu    uuugu   gaau gaaa    u
-----ggguagugacuuuucuuucc   ---    aau   acu       ----     uuu    u    auuu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature sja-miR-277

Accession MIMAT0016269
Description Schistosoma japonicum sja-miR-277 mature miRNA
Sequence 21 - UAAAUGCAUUUUCUGGCCCG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596