Stem-loop sja-mir-307

Accession

MI0015297

Description

Schistosoma japonicum sja-mir-307 precursor miRNA

Literature search

1 open access papers mention sja-mir-307
(6 sentences)

Sequence

agaaacuccucauaaagaagguuguuugauguaauauucaauaauuaauaauaauuauuauuauuauuauuaucauuucgaugaaauaauaauauaaagaagaugaauauaaaauaacuuacaUCACAACCUACUUGAUUGAGgggcacuucg
.(((.(((((((..(((.(((((((..((((((((((((((((((((....)))))))((((((((((.(((((.....))))))))))))))).........))))))).........))))))))))))).)))...)))))))...))).

Structure

a   --a       -ua   a       uu      ---------       auaauuaauaauaauuau          a     a 
 gaa   cuccuca   aag agguugu  gaugua         auauuca                  uauuauuauu uuauc u
 |||   |||||||   ||| |||||||  ||||||         |||||||                  |||||||||| ||||| u
 cuu   gggGAGU   UUC UCCAACA  CUacau         uauaagu                  auaauaauaa aguag u
g   cac       UAG   A       --      ucaauaaaa       ---------agaagaaau          -     c 

Annotation confidence Not enough data

Genome context

CABF01062455.1: 2211-2363 [+]

Mature sja-miR-307

• Accession: MIMAT0016270
• Description: Schistosoma japonicum sja-miR-307 mature miRNA
• Sequence: 124 - UCACAACCUACUUGAUUGAG - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596