Stem-loop sequence sja-mir-3479

Accession

MI0015300 (change log)

Description

Schistosoma japonicum miR-3479 stem-loop

Gene family

MIPF0001629; mir-3479

Literature search

5 open access papers mention sja-mir-3479
(35 sentences)

Stem-loop

   --c       ug       u  u        u  guga 
5'    auguuug  aggugga gu agugcaau ua    c
      |||||||  ||||||| || |||||||| ||     
3'    uauaaac  uccgcuu ca ucacguua au    g
   gga       gu       c  u        u  aaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01007794.1: 10259-10334 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015300

Mature sequence sja-miR-3479-5p

• Accession: MIMAT0016274
• Sequence: 11 - agguggauguuagugcaauuua - 32
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-3479-3p

• Accession: MIMAT0016275
• Sequence: 45 - uauugcacuuaccuucgccuug - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).