miRBase entry: sja-mir-2e

Stem-loop sja-mir-2e


Accession
MI0015310
Description
Schistosoma japonicum sja-mir-2e precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
7 open access papers mention sja-mir-2e
(41 sentences)

Sequence

ccaccgcucuUACCAACUUAGACUGAGUUAUacugcuacuguaagcuuuguaUAUCACAGUCCAAGCUUUGGUaaguuuugau
........(((((((((((.(((((.(.(((((.(((......)))...))))).).))))).)))..)))))))).......

Structure
ccaccgcu        --   A     A U     --u   ac 
        cuUACCAA  CUU GACUG G UAUac   gcu  u
        ||||||||  ||| ||||| | |||||   |||   
        gaaUGGUU  GAA CUGAC C AUaug   cga  g
-uaguuuu        UC   C     A U     uuu   au 


Annotation confidence Not enough data
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Genome context
CABF01007682.1: 2769-2851 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sja-mir-2e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-2e-5p

Accession MIMAT0016294
Description Schistosoma japonicum sja-miR-2e-5p mature miRNA
Sequence 11 - UACCAACUUAGACUGAGUUAU - 31
Evidence experimental
Illumina [1]

Mature sja-miR-2e-3p

Accession MIMAT0016295
Description Schistosoma japonicum sja-miR-2e-3p mature miRNA
Sequence 53 - UAUCACAGUCCAAGCUUUGGU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596