miRBase entry: sja-mir-3487

Stem-loop sja-mir-3487

Accession

MI0015311

Description

Schistosoma japonicum sja-mir-3487 precursor miRNA

Sequence

gacguccccgUCCUCGAACUGUUGUGGCCAccgcaccuucaucucgugcagagucagcgacaccaauugaggugaggaacaau
....(((.((.((((((..(((((((((....((((.........))))...)))).)))))....)))))))).))).....

Structure

-gacg   c  U      --AC     -    CAcc    cuu 
     ucc cg CCUCGA    UGUUG UGGC    gcac   c
     ||| || ||||||    ||||| ||||    ||||   a
     agg gu ggaguu    acagc acug    cgug   u
uaaca   a  -      aacc     g    -aga    cuc

Annotation confidence Not enough data

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Genome context

CABF01025875.1: 5674-5756 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sja-mir-3487

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sja-miR-3487

Accession	MIMAT0016296
Description	Schistosoma japonicum sja-miR-3487 mature miRNA
Sequence	11 - UCCUCGAACUGUUGUGGCCA - 30
Evidence	experimental Illumina [1]

References

PubMed ID: 20161724
An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
PLoS Negl Trop Dis (2010) 4:e596