miRBase entry: sja-mir-3494

Stem-loop sja-mir-3494


Accession
MI0015318
Description
Schistosoma japonicum sja-mir-3494 precursor miRNA


Sequence

ggagagacucGACAGAAGACUGCCGCUCAUUUuggaguacauguuuaaacucagaucauaccuuaguacgagcgcguauuugucugcgucucaau
...(((((.(((((((....(((((((((((..((......((........)).......))..)))..))))).))))))))).).)))))...

Structure
gga     u -      AGAC   -     --   Uu  -aguaca  uuu 
   gagac c GACAGA    UGC CGCUC  AUU  gg       ug   a
   ||||| | ||||||    ||| |||||  |||  ||       ||    
   cucug g cuguuu    aug gcgag  uga  cc       ac   a
uaa     c u      ----   c     ca   uu  auacuag  uca 


Annotation confidence Not enough data
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Genome context
CABF01006689.1: 6074-6168 [-]

Database links

Mature sja-miR-3494

Accession MIMAT0016303
Description Schistosoma japonicum sja-miR-3494 mature miRNA
Sequence 11 - GACAGAAGACUGCCGCUCAUUU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596