miRBase entry: sja-mir-3499

Stem-loop sja-mir-3499


Accession
MI0015323
Description
Schistosoma japonicum sja-mir-3499 precursor miRNA


Sequence

uucguugagagacggauaucucgccugugccauaagugucguaaguuggcgaaugccgaucgggccuUCUGAAUCCGUGCUGAGAUUUUguccgacacc
...((((...((((((.((((((((.(...((.(((.(((....((((((....))))))..)))))).))...).).)).)))))))))))))))...

Structure
uuc    aga      u     -  - u ugc  u   u   guaa      g 
   guug   gacgga aucuc gc c g   ca aag guc    guuggc a
   ||||   |||||| ||||| || | |   || ||| |||    ||||||  
   cagc   cugUUU UAGAG CG G C   GU Uuc cgg    uagccg a
cca    ---      -     U  U C UAA  C   -   --gc      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CABF01040210.1: 1456-1554 [+]

Database links

Mature sja-miR-3499

Accession MIMAT0016308
Description Schistosoma japonicum sja-miR-3499 mature miRNA
Sequence 68 - UCUGAAUCCGUGCUGAGAUUUU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596