Stem-loop ahy-MIR408

Accession

MI0015340

Description

Arachis hypogaea ahy-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

3 open access papers mention ahy-MIR408
(3 sentences)

Sequence

gaagaagagaugacaaagaaCUGGGAACAGGCAGAGCAUGAauggaacuaucaauagacacauuuuguucauugacgcucAUGCACUGCCUCUUCCCUGGCucucucuuucuuuuuccuucu
((((((((((.((...(((.(((((((.((((((.((((((.((......(((((.((((.....)))).))))))).)))))).)))))).))))).)).))).)))))))))))).....

Structure

-----          u  caa   a  -     C      A      a  gaacua     a    c 
     gaagaagaga ga   aga CU GGGAA AGGCAG GCAUGA ug      ucaau gaca a
     |||||||||| ||   ||| || ||||| |||||| |||||| ||      ||||| |||| u
     cuuuuucuuu cu   ucu GG CCCUU UCCGUC CGUAcu gc      aguua uugu u
ucuuc          -  --c   C  U     C      A      c  ------     c    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ahy-miR408-5p

• Accession: MIMAT0016328
• Description: Arachis hypogaea ahy-miR408-5p mature miRNA
• Sequence: 21 - CUGGGAACAGGCAGAGCAUGA - 41
• Evidence: experimental ; Illumina [1]

Mature ahy-miR408-3p

• Accession: MIMAT0016329
• Description: Arachis hypogaea ahy-miR408-3p mature miRNA
• Sequence: 81 - AUGCACUGCCUCUUCCCUGGC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20047695
   Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)
   Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ
   BMC Plant Biol (2010) 10:3